TY - JOUR
T1 - Optimal Replica-Exchange Molecular Simulations in Combination with Evolution Strategies
AU - Kowaguchi, Akie
AU - Endo, Katsuhiro
AU - Brumby, Paul E.
AU - Nomura, Kentaro
AU - Yasuoka, Kenji
N1 - Funding Information:
The authors thank Dr. Takuma Nozawa for his support for the visualization of liquid crystal molecules. The computation was carried out using the supercomputer ”Flow” at Information Technology Center, Nagoya University, and supercomputer Fugaku provided by the RIKEN Center for Computational Science (Project ID: hpci007811). In addition, this work was supported by JSPS KAKENHI Grant No. JP202222673. Along with the contribution of this paper, we strongly support ”Advancing Women in Chemistry” and encourage other young women researchers to pursue advancement in chemical sciences.
Publisher Copyright:
©
PY - 2022
Y1 - 2022
N2 - We have incorporated Evolution Strategies into the Replica-Exchange Monte Carlo simulation method to predict the phase behavior of several example fluids. The replica-exchange method allows one system to exchange temperatures with its neighbors to search for the most stable structure relatively efficiently in a single simulation. However, if the temperature intervals of the replicas are not positioned carefully, there is an issue that local exchange does not occur. Our results for a simple Lennard-Jones fluid and the liquid-crystal Yukawa model demonstrate the utility of the approach when compared to conventional methods. When Evolution Strategies were applied to the Replica-Exchange Monte Carlo simulation, the problem of a significant localized decrease in exchange probability near the phase transition was avoided. By obtaining the optimal temperature intervals, the system efficiently traverses a broader parameter space with a small number of replicas. This is equivalent to accelerating molecular simulations with limited computational resources and can be useful when attempting to predict the phase behavior of complex systems.
AB - We have incorporated Evolution Strategies into the Replica-Exchange Monte Carlo simulation method to predict the phase behavior of several example fluids. The replica-exchange method allows one system to exchange temperatures with its neighbors to search for the most stable structure relatively efficiently in a single simulation. However, if the temperature intervals of the replicas are not positioned carefully, there is an issue that local exchange does not occur. Our results for a simple Lennard-Jones fluid and the liquid-crystal Yukawa model demonstrate the utility of the approach when compared to conventional methods. When Evolution Strategies were applied to the Replica-Exchange Monte Carlo simulation, the problem of a significant localized decrease in exchange probability near the phase transition was avoided. By obtaining the optimal temperature intervals, the system efficiently traverses a broader parameter space with a small number of replicas. This is equivalent to accelerating molecular simulations with limited computational resources and can be useful when attempting to predict the phase behavior of complex systems.
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U2 - 10.1021/acs.jcim.2c00608
DO - 10.1021/acs.jcim.2c00608
M3 - Article
AN - SCOPUS:85134801531
JO - Journal of Chemical Documentation
JF - Journal of Chemical Documentation
SN - 1549-9596
ER -