Poster: In silico microarray algorithm: Accurate and fast taxonomic profiling from short read sequences

Tomoya Tagami, Tsuyoshi Hachiya, Yasubumi Sakakibara

研究成果: Conference contribution

抄録

We here propose a novel algorithm that can accurately estimate taxonomic composition of microbial communities from massive amount of short read sequences (60-120 bp). Our accuracy evaluation based on simulated datasets demonstrated that our method achieves much higher accuracies than previously proposed methods including Taxy, Qin's method and RDPClassifier. The source code is freely available under GNU Public Licence (GPL) from http://ism.dna.bio.keio.ac.jp.

本文言語English
ホスト出版物のタイトル2012 IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2012
DOI
出版ステータスPublished - 2012 5 8
イベント2012 IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2012 - Las Vegas, NV, United States
継続期間: 2012 2 232012 2 25

出版物シリーズ

名前2012 IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2012

Other

Other2012 IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2012
国/地域United States
CityLas Vegas, NV
Period12/2/2312/2/25

ASJC Scopus subject areas

  • 生体医工学
  • 応用数学

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