ReCSiP: An FPGA-based general-purpose biochemical simulator

Yasunori Osana; Masato Yoshimi; Yow Iwaoka; Toshinori Kojima; Yuri Nishikawa; Akira Funahashi; Noriko Hiroi; Yuichiro Shibata; Naoki Iwanaga; Hiroaki Kitano; Hideharu Amano

doi:10.1002/ecjb.20370

ReCSiP: An FPGA-based general-purpose biochemical simulator

Yasunori Osana, Masato Yoshimi, Yow Iwaoka, Toshinori Kojima, Yuri Nishikawa, Akira Funahashi, Noriko Hiroi, Yuichiro Shibata, Naoki Iwanaga, Hiroaki Kitano, Hideharu Amano

研究成果: Article › 査読

10 被引用数 (Scopus)

抄録

Mathematical modeling and simulation of cellular systems are essential to modern biological researches. However, simulating with software-based simulators on general-purpose microprocessors cannot provide enough throughput. ReCSiP is an FPGA-based solution for biochemical simulation and parameter scanning. This paper describes its design and hardware implementation. With Xilinx's XC2VP70-5, this method achieved 50-to 80-fold speed-up compared to Intel's Pentium4 processor.

本文言語	English
ページ（範囲）	1-10
ページ数	10
ジャーナル	Electronics and Communications in Japan, Part II: Electronics (English translation of Denshi Tsushin Gakkai Ronbunshi)
巻	90
号	7
DOI	https://doi.org/10.1002/ecjb.20370
出版ステータス	Published - 2007 7月 1

ASJC Scopus subject areas

物理学および天文学（全般）
コンピュータネットワークおよび通信
電子工学および電気工学

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Osana, Y., Yoshimi, M., Iwaoka, Y., Kojima, T., Nishikawa, Y., Funahashi, A., Hiroi, N., Shibata, Y., Iwanaga, N., Kitano, H., & Amano, H. (2007). ReCSiP: An FPGA-based general-purpose biochemical simulator. Electronics and Communications in Japan, Part II: Electronics (English translation of Denshi Tsushin Gakkai Ronbunshi), 90(7), 1-10. https://doi.org/10.1002/ecjb.20370

Osana, Y, Yoshimi, M, Iwaoka, Y, Kojima, T, Nishikawa, Y, Funahashi, A, Hiroi, N, Shibata, Y, Iwanaga, N, Kitano, H & Amano, H 2007, 'ReCSiP: An FPGA-based general-purpose biochemical simulator', Electronics and Communications in Japan, Part II: Electronics (English translation of Denshi Tsushin Gakkai Ronbunshi), vol. 90, no. 7, pp. 1-10. https://doi.org/10.1002/ecjb.20370

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AU - Hiroi, Noriko

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ReCSiP: An FPGA-based general-purpose biochemical simulator

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