SAMSCOPE: An opengl-based real-time interactive scale-free SAM viewer

Kris Popendorf, Yasubumi Sakakibara

研究成果: Article査読

6 被引用数 (Scopus)

抄録

Existing SAM visualization tools like 'samtools tview' (Li et al., 2009) are limited to a small region of the genome, and tools like Tablet (Milne et al., 2010) are limited to a relatively small number of reads and may fail outright on large datasets. We need to visualize complex ChIP-Seq and RNA-Seq features such as polarity as well as coverage across whole 3 Gbp genomes such as Human. We have addressed these problems in a lightweight visualization system called SAMSCOPE accelerated by OpenGL. The extensive pre-processing and fast OpenGL interface of SAMSCOPE provides instantaneous and intuitive browsing of complex data at all levels of detail across multiple experiments.

本文言語English
論文番号bts122
ページ(範囲)1276-1277
ページ数2
ジャーナルBioinformatics
28
9
DOI
出版ステータスPublished - 2012 5

ASJC Scopus subject areas

  • 統計学および確率
  • 生化学
  • 分子生物学
  • コンピュータ サイエンスの応用
  • 計算理論と計算数学
  • 計算数学

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