Stochastic simulation for biochemical reactions on FPGA

M. Yoshimi, Y. Osana, T. Fukushima, H. Amano

研究成果: Chapter

19 被引用数 (Scopus)

抄録

Biological cell simulations generally require high-powered computer resources. A reconfigurable system is a possible solution to the problem as an alternative approach against PC/WS clusters. A stochastic simulation algorithm proposed by Gillespie is implemented on a reconfigurable platform called ReCSiP, and the performance is evaluated. The implemented Lotka system outperforms the software implementation on AthlonXP2800+ by 105.13 times.

本文言語English
ホスト出版物のタイトルLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
編集者Jurgen Becker, Marco Platzner, Serge Vernalde
出版社Springer Verlag
ページ105-114
ページ数10
ISBN(印刷版)3540229892, 9783540229896
DOI
出版ステータスPublished - 2004 1 1

出版物シリーズ

名前Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
3203
ISSN(印刷版)0302-9743
ISSN(電子版)1611-3349

ASJC Scopus subject areas

  • 理論的コンピュータサイエンス
  • コンピュータ サイエンス(全般)

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